dot/.config/doom/config.el

(setq user-full-name "Phil Bajsicki")

;; must be set before `org` is loaded
(setq org-directory "~/enc/org/")
(setq org-agenda-files (directory-files-recursively "~/enc/org/" ".org$"))

(setq global-auto-revert-mode t)
(setq auth-sources '("~/.authinfo"))
(setq-default backup-inhibited t)

(setq locale-coding-system 'utf-8)
(set-terminal-coding-system 'utf-8)
(set-keyboard-coding-system 'utf-8)
(set-clipboard-coding-system 'utf-8)
(prefer-coding-system 'utf-8)
(setq-default indent-tabs-mode t)

(setq langtool-java-bin "/usr/bin/java")

(after! counsel
  (setq counsel-outline-display-style 'title))

(load-theme 'doom-one t)
(doom-themes-neotree-config)
(doom-themes-org-config)

(setq doom-themes-enable-bold t
      doom-themes-enable-italic t)

(ligature-set-ligatures 't '("www"))
;; Enable traditional ligature support in eww-mode, if the
;; `variable-pitch' face supports it
(ligature-set-ligatures 'eww-mode '("ff" "fi" "ffi"))
;; Enable all Cascadia Code ligatures in programming modes
(ligature-set-ligatures 'org-mode '("|||>" "<|||" "<==>" "<!--" "####" "~~>" "***" "||=" "||>"
                                     ":::" "::=" "=:=" "===" "==>" "=!=" "=>>" "=<<" "=/=" "!=="
                                     "!!." ">=>" ">>=" ">>>" ">>-" ">->" "->>" "-->" "---" "-<<"
                                     "<~~" "<~>" "<*>" "<||" "<|>" "<$>" "<==" "<=>" "<=<" "<->"
                                     "<--" "<-<" "<<=" "<<-" "<<<" "<+>" "</>" "###" "#_(" "..<"
                                     "..." "+++" "/==" "///" "_|_" "www" "&&" "^=" "~~" "~@" "~="
                                     "~>" "~-" "**" "*>" "*/" "||" "|}" "|]" "|=" "|>" "|-" "{|"
                                     "[|" "]#" "::" ":=" ":>" ":<" "$>" "==" "=>" "!=" "!!" ">:"
                                     ">=" ">>" ">-" "-~" "-|" "->" "--" "-<" "<~" "<*" "<|" "<:"
                                     "<$" "<=" "<>" "<-" "<<" "<+" "</" "#{" "#[" "#:" "#=" "#!"
                                     "##" "#(" "#?" "#_" "%%" ".=" ".-" ".." ".?" "+>" "++" "?:"
                                     "?=" "?." "??" ";;" "/*" "/=" "/>" "//" "__" "~~" "(*" "*)"
                                     "\\\\" "://"))
;; Enables ligature checks globally in all buffers.  You can also do it
;; per mode with `ligature-mode'.
(global-ligature-mode t)

(set-frame-parameter nil 'alpha-background 85)
(add-to-list 'default-frame-alist '(alpha-background . 85))

(setq display-line-numbers-type 'relative)
(setq next-screen-context-lines 4)
(setq-default global-visual-line-mode t)
(setq x-stretch-cursor t)
(setq column-number-mode t)

(global-set-key "\C-g" 'keyboard-quit)
(global-set-key "\C-cu" 'browse-url-chrome)

(setq straight-repository-branch "develop")

(use-package! pdf-tools
  :defer t
  :commands (pdf-loader-install)
  :mode "\\.pdf\\'"
  :bind (:map pdf-view-mode-map
	      ("n" . pdf-view-next-line-or-next-page)
	      ("p" . pdf-view-previous-line-or-previous-page)
	      ("C-=" . pdf-view-enlarge)
	      ("C--" . pdf-view-shrink))
  :init (pdf-loader-install)
  :config (add-to-list 'revert-without-query ".pdf"))

(add-hook 'pdf-view-mode-hook #'(lambda () (interactive (display-line-numbers-mode))))

(add-to-list 'auto-mode-alist
           '("\\.org\\'" . org-mode))

(setq org-image-actual-width nil)
(setq org-enforce-todo-dependencies t)
(setq org-insert-heading-respect-content nil)
(setq org-reverse-note-order nil)
(setq org-show-following-heading t)
(setq org-show-hierarchy-above t)
(setq org-deadline-warning-days 7)
(setq org-blank-before-new-entry (quote ((heading . t)
					 (plain-list-item . nil))))
(setq org-todo-repeat-to-state "LOOP")
(setq org-remove-highlights-with-change nil)
(setq org-read-date-prefer-future nil)
(setq org-special-ctrl-a/e t)
(setq org-special-ctrl-k t)
(setq org-yank-adjusted-subtrees t)
(setq org-M-RET-may-split-line t)
(setq org-log-done (quote time))
(setq org-log-into-drawer t)
(setq org-catch-invisible-edits "smart")
(setq org-completion-use-ido t)
(setq org-use-property-inheritance nil)
(setq org-duration-format 'h:mm)
(setq org-hierarchical-todo-statistics t)

(defun my-org-tree-to-indirect-buffer (&optional arg)
  "Create indirect buffer and narrow it to current subtree.
The buffer is named after the subtree heading, with the filename
appended.  If a buffer by that name already exists, it is
selected instead of creating a new buffer."
  (interactive "P")
  (let* ((new-buffer-p)
         (pos (point))
         (buffer-name (let* ((heading (org-get-heading t t))
                             (level (org-outline-level))
                             (face (intern (concat "outline-" (number-to-string level))))
                             (heading-string (propertize (org-link-display-format heading)
                                                         'face face)))
                        (concat heading-string "::" (buffer-name))))
         (new-buffer (or (get-buffer buffer-name)
                         (prog1 (condition-case nil
                                    (make-indirect-buffer (current-buffer) buffer-name 'clone)
                                  (error (make-indirect-buffer (current-buffer) buffer-name)))
                           (setq new-buffer-p t)))))
    (switch-to-buffer new-buffer)
    (when new-buffer-p
      ;; I don't understand why setting the point again is necessary, but it is.
      (goto-char pos)
      (rename-buffer buffer-name)
      (org-narrow-to-subtree))))

(advice-add 'org-tree-to-indirect-buffer :override 'my-org-tree-to-indirect-buffer)

(setq org-element--cache-self-verify nil)

(modify-all-frames-parameters
 '((right-divider-width . 2)
   (internal-border-width . 0)))
(dolist (face '(window-divider
                window-divider-first-pixel
                window-divider-last-pixel))
  (face-spec-reset-face face)
  (set-face-foreground face (face-attribute 'default :background)))
(set-face-background 'fringe (face-attribute 'default :background))

(setq
 ;; Edit settings
 org-auto-align-tags nil
 org-tags-column 0
 org-catch-invisible-edits 'show-and-error
 org-insert-heading-respect-content t

 ;; Org styling, hide markup etc.
 org-hide-emphasis-markers t
 org-pretty-entities t
 org-ellipsis "…"

 ;; Agenda styling
 org-agenda-tags-column 0
 org-agenda-block-separator ?─
 org-agenda-time-grid
 '((daily today require-timed)
   (800 1000 1200 1400 1600 1800 2000)
   " ┄┄┄┄┄ " "┄┄┄┄┄┄┄┄┄┄┄┄┄┄┄")
 org-agenda-current-time-string
 "⌚ now ─────────────────────────────────────────────────")

(global-org-modern-mode)

(setq-default org-enforce-todo-dependencies t)
(setq org-enforce-todo-checkbox-dependencies t)

(add-hook 'write-file-hooks 'time-stamp)
(add-hook 'org-mode-hook
          (lambda ()
            ;; yasnippet
            ;;disabled;            (make-variable-buffer-local 'yas/trigger-key)
            ;;disabled;            (org-set-local 'yas/trigger-key [tab])
            ;;disabled;            (define-key yas/keymap [tab] 'yas/next-field-group)
            ;; flyspell mode for spell checking everywhere
            ;;disabled; (flyspell-mode 1)
            ;; auto-fill mode on
            (auto-fill-mode 1)))

(global-set-key "\C-cl" 'org-store-link)
(global-set-key "\C-ch" 'counsel-org-link)
(global-set-key "\C-cne" 'elgantt-open)
(global-set-key "\C-cnn" 'org-capture)

(global-set-key "\C-cia"  '(lambda ()(interactive)
                               (org-time-stamp '(16))))
(global-set-key "\C-cii"  '(lambda () (interactive)
                               (org-time-stamp-inactive '(16))))

(setq org-todo-keywords
      '((sequence
         "INBOX(i)"
         "TASK(t)"  ; A task that needs doing & is ready to do
         "PROJ(p)"  ; A project, which usually contains other tasks
         "LOOP(r)"  ; A recurring task
         "WAIT(w)"  ; Something external is holding up this task
         "HOLD(h)"  ; This task is paused/on hold because of me
         "|"
         "DONE(d)"  ; Task successfully completed
         "KILL(k)") ; Task was cancelled, aborted or is no longer applicable
        (sequence
         "DECIDE()"   ; for making decisions
         "|"
         "OKAY(o)"    ; okay as-is
         "YES(y)"     ; take action
         "NO(n)"))    ; don't take action
      org-todo-keyword-faces
      '(
        ("INBOX"     :foreground "cyan"   :weight bold)
        ("TASK"      :foreground "purple"   :weight bold)
        ("PROJ"      :foreground "violet"         :weight bold)
        ("LOOP"      :foreground "magenta"      :weight bold)
        ("WAIT"      :foreground "yellow"       :weight bold)
        ("HOLD"      :foreground "orange"       :weight bold)
        ("DONE"      :foreground "green" :weight bold)
        ("KILL"      :foreground "grey"   :weight bold)))

(add-hook 'org-insert-heading-hook
          (lambda ()
            (if
                (or
                 (string-match "journal.org" buffer-file-name)
                 (string-match "money" buffer-file-name)
                 (string-match "therapy.org" buffer-file-name))
                ((lambda ()
                   (interactive)
                   (org-time-stamp-inactive '(16))
                   (newline)))
              (setq org-insert-heading-hook nil)
            )))

(setq org-capture-templates '(("t" "inbox" entry (file+headline "~/enc/org/phil.org" "Inbox") "* TODO %i%?")
                              ("i" "idea" entry (file+headline "~/enc/org/phil.org" "Ideas") "* %?")
                              ("d" "reminder" entry (file+headline "~/enc/org/phil.org" "Reminders") "* %i%? \n %U")
                              ("p" "person" entry (file+headline "~/enc/org/people.org" "People")
                               "* %(org-contacts-template-name)
:PROPERTIES:
:EMAIL: %(org-contacts-template-email)
:PHONE: %(org-contacts-template-phone)
:ALIAS:
:NICKNAME:
:IGNORE:
:ICON:
:NOTE:
:ADDRESS:
:BIRTHDAY:
:END:")))

(use-package! org-transclusion
             :after org
              :init
              (map!
               :map global-map "<F12>" #'org-transclusion-add
               :leader
               :prefix "n"
               :desc "Org Transclusion Mode" "t" #'org-transclusion-mode))

(add-hook 'org-babel-after-execute-hook 'org-display-inline-images)

(with-eval-after-load 'ox-latex
   (add-to-list 'org-latex-classes
                '("memoir"
                  "\\documentclass{memoir}"
                  ("\\chapter{%s}" . "\\chapter*{%s}")
                  ("\\section{%s}" . "\\section*{%s}")
                  ("\\subsection{%s}" . "\\subsection*{%s}")
                  ("\\subsubsection{%s}" . "\\subsubsection*{%s}"))))

(defun org-super-links-quick-related ()
  (interactive)
  (let ((org-super-links-link-prefix "\nrelated: "))
    (org-super-links-link)))

(setq org-super-links-related-into-drawer t)
(setq org-super-links-related-drawer-default-name "RELATED"
  	org-super-links-link-prefix 'org-super-links-link-prefix-timestamp)

(setq org-export-with-broken-links t) ;; avoiding error on export

(global-unset-key (kbd "C-c l"))
(global-set-key (kbd "C-c l l") 'org-super-links-link)
(global-set-key (kbd "C-c l s") 'org-super-links-store-link)
(global-set-key (kbd "C-c l i") 'org-super-links-insert-drawer-link)
(global-set-key (kbd "C-c l r") 'org-super-links-quick-related)
(global-set-key (kbd "C-c l d") 'org-super-links-delete-link)

(org-wild-notifier-mode)

(setq org-wild-notifier-alert-time '(10))
(setq org-wild-notifier-notification-title "Emacs org-mode agenda")
(setq org-wild-notifier-keyword-whitelist '("TODO"))

(setq org-refile-targets '((nil :maxlevel . 9)
                                (org-agenda-files :maxlevel . 9)))
(setq org-outline-path-complete-in-steps nil)
(setq org-refile-use-outline-path t)

(setq org-contacts-files '("~/enc/org/people.org"))

(define-prefix-command 'org-roam-map)
(global-set-key "\C-r" 'org-roam-map)
(define-key org-roam-map "o" 'org-roam-buffer-toggle)
(define-key org-roam-map "f" 'org-roam-node-find)
(define-key org-roam-map "i" 'org-roam-node-insert)
(define-key org-roam-map "n" 'org-roam-capture)

(setq org-roam-v2-ack t)
(setq org-roam-completion-everywhere t)
(setq org-roam-directory
      (file-truename "~/enc/org/roam"))
(org-roam-db-autosync-mode)
(org-roam-db-autosync-enable)

(setq org-roam-capture-templates
      '(("n" "default" plain
         "%?"
        :if-new (file+head "${slug}.org" "#+title: ${title}\n#+category: ${title}\n#+filetags: \n")
        :empty-lines 1
        :unnarrowed t)
        ("j" "journal" plain
         "%?"
        :if-new (file+head "journal/journal-${slug}.org" "#+title: ${title}\n#+category: 📔${title}\n#+filetags: 📔\n")
         :empty-lines 1
         :unnarrowed t)
        ("t" "Therapy" plain
         "#+title: ${title}\n"
         :if-new (file+head "therapy/therapy-${slug}.org" "#+title: ${title}\n#+category: 📗 ${title}\n#+filetags: 📗\n")
         :empty-lines 1
         :unnarrowed)))

(global-set-key "\C-ca" 'org-agenda)
(define-prefix-command 'org-agenda-map)
(global-set-key "\C-a" 'org-agenda-map)
(define-key org-agenda-map "n" 'org-agenda-capture)
(define-key org-agenda-map "a" 'org-agenda)

(setq org-agenda-start-day nil
        org-agenda-span '14
        org-agenda-dim-blocked-tasks 'invisible
        org-agenda-sorting-strategy
            '((agenda habit-down time-up priority-down category-keep)
              (todo priority-down category-keep)
              (search category-keep))
        org-deadline-warning-days 3
        org-agenda-insert-diary-extract-time t
        org-log-into-drawer t
        org-clock-into-drawer t
        org-agenda-log-mode-items '(closed clock state)
        org-agenda-prefix-format "%l %i %c %s %t")

(setq org-agenda-compact-blocks t)
(setq org-agenda-use-tag-inheritance (quote (agenda)));; agenda performance
(setq org-agenda-span 1)
(add-hook 'org-agenda-mode-hook '(lambda () (hl-line-mode 1)))

(setq org-agenda-custom-commands
	  (quote (("x" "Phil's view" agenda ""
			   ((org-agenda-prefix-format " %i %-12:c %s %t "))))))

(setq org-agenda-skip-deadline-if-done t)

(setq org-agenda-skip-scheduled-if-done t)

(setq org-agenda-text-search-extra-files (quote (agenda-archives)))

(setq org-agenda-log-mode-items (quote (state)))

(setq org-agenda-search-headline-for-time nil)

(setq org-agenda-include-diary t)

(setq org-agenda-repeating-timestamp-show-all t)

(setq org-agenda-show-all-dates t)

(setq org-agenda-sorting-strategy
		(quote ((agenda habit-down time-up user-defined-up priority-down category-keep)
				(todo priority-down category-keep)
				(tags priority-down category-keep)
				(search category-keep))))

(setq org-agenda-start-on-weekday nil)

(setq org-agenda-skip-timestamp-if-deadline-is-shown t)

(define-key org-agenda-mode-map (kbd "C-p") 'my-scroll-down-half)
(define-key org-agenda-mode-map (kbd "C-n") 'my-scroll-up-half)

(setq org-agenda-format-date (lambda (date) (concat "\n"
        (make-string (window-width) 9472)
        "\n"
        (org-agenda-format-date-aligned date))))

(setq org-export-with-broken-links t)

(defun my-org-copy-region-as-markdown ()
  "Copy the region (in Org) to the system clipboard as Markdown."
  (interactive)
  (if (use-region-p)
      (let* ((region
	      (buffer-substring-no-properties
		      (region-beginning)
		      (region-end)))
	     (markdown
	      (org-export-string-as region 'md t '(:with-toc nil))))
	(gui-set-selection 'CLIPBOARD markdown))))

(setq doom-snippets-enable-short-helpers t)

(setq dired-open-extensions '(("gif" . "sxiv")
                              ("jpg" . "sxiv")
                              ("png" . "sxiv")
                              ("mkv" . "mpv")
                              ("mp4" . "mpv")))

(mode-icons-mode)
(add-hook 'dired-mode-hook #'mode-icons--mode-disable) ;; with mode-icons, visiting a dir with dired takes up *lots* of CPU for =mode-icons-reset= (performance-issue)

(add-to-list 'auto-mode-alist '("\\.[Cc][Ss][Vv]\\'" . csv-mode))
(autoload 'csv-mode "csv-mode"
    "Major mode for editing comma-separated value files." t)

;; To open files with .journal extension in hledger-mode
(add-to-list 'auto-mode-alist '("\\.journal\\'" . hledger-mode))

;; Provide the path to you journal file.
;; The default location is too opinionated.
(setq hledger-jfile "~/enc/org/hledger/2023.journal")

;;; Auto-completion for account names
;; For company-mode users,
(add-to-list 'company-backends 'hledger-company)